15 citations · 32 across the 23 of their papers we have counts for
7 papers · 2 filters
The Superposition of Diffusion Models Using the Itô Density Estimator
Marta Skreta, Lazar Atanackovic, Avishek Joey Bose +2
The Cambrian explosion of easily accessible pre-trained diffusion models suggests a demand for methods that combine multiple different pre-trained diffusion models without incurrin…
Predicting Drug Effects from High-Dimensional, Asymmetric Drug Datasets by Using Graph Neural Networks: A Comprehensive Analysis of Multitarget Drug Effect Prediction
Avishek Bose, Guojing Cong
Graph neural networks (GNNs) have emerged as one of the most effective ML techniques for drug effect prediction from drug molecular graphs. Despite having immense potential, GNN mo…
Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction
Jarrid Rector-Brooks, Mohsin Hasan, Zhangzhi Peng +9
Generative modeling of discrete data underlies important applications spanning text-based agents like ChatGPT to the design of the very building blocks of life in protein sequences…
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation
Guillaume Huguet, James Vuckovic, Kilian Fatras +9
Proteins are essential for almost all biological processes and derive their diverse functions from complex 3D structures, which are in turn determined by their amino acid sequences…
Metric Flow Matching for Smooth Interpolations on the Data Manifold
Kacper Kapuśniak, Peter Potaptchik, Teodora Reu +5
Matching objectives underpin the success of modern generative models and rely on constructing conditional paths that transform a source distribution into a target distribution. Des…
Fisher Flow Matching for Generative Modeling over Discrete Data
Oscar Davis, Samuel Kessler, Mircea Petrache +3
Generative modeling over discrete data has recently seen numerous success stories, with applications spanning language modeling, biological sequence design, and graph-structured mo…
Iterated Denoising Energy Matching for Sampling from Boltzmann Densities
Tara Akhound-Sadegh, Jarrid Rector-Brooks, Avishek Joey Bose +9
Efficiently generating statistically independent samples from an unnormalized probability distribution, such as equilibrium samples of many-body systems, is a foundational problem…