activity
20232025
most citedUnderstanding the Natural Language of DNA using Encoder-Decoder Foundation Models with Byte-level Precision

8 citations · 12 across the 5 of their papers we have counts for

collaborators

6 papers

q-bio.QM2025

GeneFlow: Translation of Single-cell Gene Expression to Histopathological Images via Rectified Flow

Mengbo Wang, Shourya Verma, Aditya Malusare +6

Spatial transcriptomics (ST) technologies can be used to align transcriptomes with histopathological morphology, presenting exciting new opportunities for biomolecular discovery. U…

cs.LG2025

Augmenting generative models with biomedical knowledge graphs improves targeted drug discovery

Aditya Malusare, Vineet Punyamoorty, Vaneet Aggarwal

Recent breakthroughs in generative modeling have demonstrated remarkable capabilities in molecular generation, yet the integration of comprehensive biomedical knowledge into these…

cs.LG2025

Contrastive Cross-Modal Learning for Infusing Chest X-ray Knowledge into ECGs

Vineet Punyamoorty, Aditya Malusare, Vaneet Aggarwal

Modern diagnostic workflows are increasingly multimodal, integrating diverse data sources such as medical images, structured records, and physiological time series. Among these, el…

cs.CV2025

BalancedDPO: Adaptive Multi-Metric Alignment

Dipesh Tamboli, Souradip Chakraborty, Aditya Malusare +3

Diffusion models have achieved remarkable progress in text-to-image generation, yet aligning them with human preference remains challenging due to the presence of multiple, sometim…

cs.LG2024★ 4 cited

Improving Molecule Generation and Drug Discovery with a Knowledge-enhanced Generative Model

Aditya Malusare, Vaneet Aggarwal

Recent advancements in generative models have established state-of-the-art benchmarks in the generation of molecules and novel drug candidates. Despite these successes, a significa…

cs.LG2023★ 8 cited

Understanding the Natural Language of DNA using Encoder-Decoder Foundation Models with Byte-level Precision

Aditya Malusare, Harish Kothandaraman, Dipesh Tamboli +2

This paper presents the Ensemble Nucleotide Byte-level Encoder-Decoder (ENBED) foundation model, analyzing DNA sequences at byte-level precision with an encoder-decoder Transformer…