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20232025
most citedKirigami: large convolutional kernels improve deep learning-based RNA secondary structure prediction

1 citations · 1 across the 7 of their papers we have counts for

collaborators

7 papers

cs.CC2025

A Courcelle-Type Metatheorem for Rank-Bounded Unconstrained Binary Optimization

Marc Harary

We present the first uniform XP exact algorithm for unconstrained binary optimization of quadratic, polynomial, fractional, and other objectives under a single parameter, the diffe…

cs.CV2025

AdvDINO: Domain-Adversarial Self-Supervised Representation Learning for Spatial Proteomics

Stella Su, Marc Harary, Scott J. Rodig +1

Self-supervised learning (SSL) has emerged as a powerful approach for learning visual representations without manual annotations. However, the robustness of standard SSL methods to…

eess.IV2024

Fluoroformer: Scaling multiple instance learning to multiplexed images via attention-based channel fusion

Marc Harary, Eliezer M. Van Allen, William Lotter

Though multiple instance learning (MIL) has been a foundational strategy in computational pathology for processing whole slide images (WSIs), current approaches are designed for tr…

stat.ML2024

Combinatorial optimization of the coefficient of determination

Marc Harary

Robust correlation analysis is among the most critical challenges in statistics. Herein, we develop an efficient algorithm for selecting the - subset of points in the plane…

stat.ME2024

Efficient algorithms for the sensitivities of the Pearson correlation coefficient and its statistical significance to online data

Marc Harary

Reliably measuring the collinearity of bivariate data is crucial in statistics, particularly for time-series analysis or ongoing studies in which incoming observations can signific…

q-bio.BM2024★ 1 cited

Kirigami: large convolutional kernels improve deep learning-based RNA secondary structure prediction

Marc Harary, Chengxin Zhang

We introduce a novel fully convolutional neural network (FCN) architecture for predicting the secondary structure of ribonucleic acid (RNA) molecules. Interpreting RNA structures a…

q-bio.QM2023

SHIELD: Secure Haplotype Imputation Employing Local Differential Privacy

Marc Harary

We introduce Secure Haplotype Imputation Employing Local Differential privacy (SHIELD), a program for accurately estimating the genotype of target samples at markers that are not d…