2 papers
cs.LG2025
STAR-VAE: A Scalable Latent-Variable Transformer for Controllable Molecular Generation
Bum Chul Kwon, Ben Shapira, Moshiko Raboh +7
Many molecular Transformers lack probabilistic latent variables for posterior inference and latent interpolation. We introduce STAR-VAE, a SELFIES-encoded, Transformer-based, AutoR…
q-bio.GN2025
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
Hongyang Li, Sanjoy Dey, Bum Chul Kwon +7
Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of…