4 papers
PySlyde: A Lightweight, Open-Source Toolkit for Pathology Preprocessing
Gregory Verghese, Anthony Baptista, Chima Eke +10
The integration of artificial intelligence (AI) into pathology is advancing precision medicine by improving diagnosis, treatment planning, and patient outcomes. Digitised whole-sli…
MOSAIK: Multi-Origin Spatial Transcriptomics Analysis and Integration Kit
Anthony Baptista, Rosamond Nuamah, Ciro Chiappini +1
Spatial transcriptomics (ST) has revolutionised transcriptomics analysis by preserving tissue architecture, allowing researchers to study gene expression in its native spatial cont…
Deep Learning as Ricci Flow
Anthony Baptista, Alessandro Barp, Tapabrata Chakraborti +3
Deep neural networks (DNNs) are powerful tools for approximating the distribution of complex data. It is known that data passing through a trained DNN classifier undergoes a series…
Mining higher-order triadic interactions
Marta Niedostatek, Anthony Baptista, Jun Yamamoto +4
Complex systems often involve higher-order interactions which require us to go beyond their description in terms of pairwise networks. Triadic interactions are a fundamental type o…