4 papers
Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation
David F. Anderson, Aidan S. Howells, Diego Rojas La Luz
Stochastic reaction networks with mass-action kinetics provide a useful framework for understanding processes -- biochemical and otherwise -- in homogeneous environments. However,…
Noise Tradeoffs, Stationary Information Flow, and Structural Balance in Unit-Birth Networks
David F. Anderson
In 2019, Paulsson and collaborators conjectured that stochastic biochemical control networks have fundamental limits on how much intrinsic noise can be simultaneously suppressed ac…
Computing with reaction networks at input-independent speed: exponential and logarithmic functions
David F. Anderson, Badal Joshi, Tung D. Nguyen
The concept of input-independent computational time for chemistry-based analog computers was introduced in Anderson-Joshi (2025), where it was shown that arithmetic operations can…
Parametric Sensitivity Analysis for Models of Reaction Networks within Interacting Compartments
David F. Anderson, Aidan S. Howells
Models of reaction networks within interacting compartments (RNIC) are a generalization of stochastic reaction networks. It is most natural to think of the interacting compartments…