Showing 2026Show all
3 papers · 1 filter
cs.DC2026
Cyclotron: A Recurrence Language for Expressing Interprocessor Communication
Shiv Sundram, Akhilesh Balasingam, Nathan Zhang +2
We present Cyclotron, a compiler that expresses streaming dataflow algorithms using recurrence equations, which are then compiled to distributed topologies of interlinked processor…
cs.PL2026
Compiling Bioinformatics Recurrences
Bala Vinaithirthan, Shiv Sundram, Sneha Goenka +1
Many bioinformatics algorithms, such as sequence alignment and structure prediction, can be expressed as recurrence equations over a dynamic programming matrix. Efficient implement…
cs.PF2026
Dependencies and Dataflow in Seed-Filter-Extend Pipelines
Shiv Sundram
Comparing genomes is critical for discovering mutations, tracking evolutionary lineages, and advancing cross-species genomics. Fundamentally, this reduces to an O(n^2) string-match…