activity
20142026
most citedCreation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0

93 citations · 94 across the 5 of their papers we have counts for

collaborators

7 papers

math.OC2026

Speeding Up Nonsmooth Bayesian MCMC Sampling via Inexact Proximal Unadjusted Langevin Algorithm

Susan Ghaderi, Alireza Kabgani, Yves Moreau +1

We study sampling from posterior distributions with nonsmooth composite potentials, a setting in which proximal-based Langevin methods are theoretically appealing but in practice l…

math.OC2025

(Adaptive) Scaled gradient methods beyond locally Holder smoothness: Lyapunov analysis, convergence rate and complexity

Susan Ghaderi, Morteza Rahimi, Yves Moreau +1

This paper addresses the unconstrained minimization of smooth convex functions whose gradients are locally Holder continuous. Building on these results, we analyze the Scaled Gradi…

math.OC2025

Minimizing Smooth Kurdyka-Łojasiewicz Functions via Generalized Descent Methods: Convergence Rate and Complexity

Masoud Ahookhosh, Susan Ghaderi, Alireza Kabgani +1

This paper introduces a generalized descent algorithm (DEAL) for minimizing smooth nonconvex functions. If the objective function is nonsmooth, a smoothing technique (e.g., forward…

math.OC2025

Projected subgradient methods for paraconvex optimization: Application to robust low-rank matrix recovery

Morteza Rahimi, Susan Ghaderi, Yves Moreau +1

This paper is devoted to the class of paraconvex functions and presents some of its fundamental properties, characterization, and examples that can be used for their recognition an…

q-bio.QM2017★ 93 cited

Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0

Laurent Heirendt, Sylvain Arreckx, Thomas Pfau +52

COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental data and quantitative prediction of physico…

math.OC2015

Two globally convergent nonmonotone trust-region methods for unconstrained optimization

Masoud Ahookhosh, Susan Ghaderi

This paper addresses some trust-region methods equipped with nonmonotone strategies for solving nonlinear unconstrained optimization problems. More specifically, the importance of…

math.OC2014★ 1 cited

On efficiency of nonmonotone Armijo-type line searches

Masoud Ahookhosh, Susan Ghaderi

Monotonicity and nonmonotonicity play a key role in studying the global convergence and the efficiency of iterative schemes employed in the field of nonlinear optimization, where g…