7 citations · 12 across the 14 of their papers we have counts for
7 papers · 1 filter
E-OPSD: Taming Entropy Overshoot in On-Policy Self-Distillation
Yifei Liu, Minghao Fang, Xinyu Gu +6
On-policy self-distillation (OPSD) provides dense token-level supervision without a second model: one network acts as teacher with the reference solution and as student with only t…
Bison: Cross-Dataset Learning for Unseen-Compound Perturbation Prediction
Yunfan Liu, Kasra Ghorbani, Yufei Huang +6
Predicting transcriptional responses to unseen compounds is limited by fragmented chemical coverage and heterogeneous experimental platforms and gene panels. To assess molecular ge…
Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges
Changxi Chi, Yufei Huang, Jun Xia +4
Predicting single-cell perturbation outcomes directly advances gene function analysis and facilitates drug candidate selection, making it a key driver of both basic and translation…
Multimodal Regression for Enzyme Turnover Rates Prediction
Bozhen Hu, Cheng Tan, Siyuan Li +4
The enzyme turnover rate is a fundamental parameter in enzyme kinetics, reflecting the catalytic efficiency of enzymes. However, enzyme turnover rates remain scarce across most org…
Graph-level Protein Representation Learning by Structure Knowledge Refinement
Ge Wang, Zelin Zang, Jiangbin Zheng +2
This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-w…
Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction
Yufei Huang, Siyuan Li, Jin Su +9
Protein structure-based property prediction has emerged as a promising approach for various biological tasks, such as protein function prediction and sub-cellular location estimati…
Co-modeling the Sequential and Graphical Routes for Peptide Representation Learning
Zihan Liu, Ge Wang, Jiaqi Wang +2
Peptides are formed by the dehydration condensation of multiple amino acids. The primary structure of a peptide can be represented either as an amino acid sequence or as a molecula…