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q-bio.MN2025★ 1 cited
BiRNe: Symbolic bifurcation analysis of reaction networks with Python
Richard Golnik, Thomas Gatter, Peter F. Stadler +1
Computer algebra methods for analyzing reaction networks often rely on the assumption of mass-action kinetics, which transform the governing ODEs into polynomial systems amenable t…
q-bio.MN2025★ 1 cited
Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks
Richard Golnik, Thomas Gatter, Peter F. Stadler +1
Autocatalysis is an important feature of metabolic networks, contributing crucially to the self-maintenance of organisms. Autocatalytic subsystems of chemical reaction networks (CR…