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q-bio.GN2026
Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models
Nirjhor Datta, Swakkhar Shatabda, M. Sohel Rahman
Genomic foundation models are increasingly reused as frozen feature extractors for downstream sequence prediction, offering a compute-efficient alternative to full fine-tuning. How…
q-bio.GN2025
Embedding Is (Almost) All You Need: Retrieval-Augmented Inference for Generalizable Genomic Prediction Tasks
Nirjhor Datta, Swakkhar Shatabda, M Sohel Rahman
Large pre-trained DNA language models such as DNABERT-2, Nucleotide Transformer, and HyenaDNA have demonstrated strong performance on various genomic benchmarks. However, most appl…