4 papers
WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes
Guanghong Zuo
CVTree is an alignment-free methodology for inferring species phylogeny and taxonomy. This method allows for the efficient and accurate resolution of evolutionary relationships amo…
EscalNet: Learn isotropic representation space for biomolecular dynamics based on effective energy
Guanghong Zuo
Deep learning has emerged as a powerful framework for analyzing biomolecular dynamics trajectories, enabling efficient representations that capture essential system dynamics and fa…
CLTree: A Tool for Annotating, Rooting, and Evaluating Phylogenetic Trees Leveraging Genomic Lineages
Guanghong Zuo
Collapse Lineage Tree (CLTree) is a software tool that annotates, roots, and evaluates phylogenetic trees by using lineages. A recursive algorithm was designed to annotate the bran…
CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently
Yi-Fei Lu, Xiao-Yang Zhi, Guang-Hong Zuo
The Composition Vector Tree (CVTree) method, developed under the leadership of Professor Hao Bailin, is an alignment-free algorithm for constructing phylogenetic trees. Although in…