1 citations · 2 across the 4 of their papers we have counts for
6 papers
MolEdit: Knowledge Editing for Multimodal Molecule Language Models
Zhenyu Lei, Patrick Soga, Yaochen Zhu +3
Understanding and continuously refining multimodal molecular knowledge is crucial for advancing biomedicine, chemistry, and materials science. Molecule language models (MoLMs) have…
SemCoT: Accelerating Chain-of-Thought Reasoning through Semantically-Aligned Implicit Tokens
Yinhan He, Wendy Zheng, Yaochen Zhu +6
The verbosity of Chain-of-Thought (CoT) reasoning hinders its mass deployment in efficiency-critical applications. Recently, implicit CoT approaches have emerged, which encode reas…
Energy-Based Models for Predicting Mutational Effects on Proteins
Patrick Soga, Zhenyu Lei, Yinhan He +2
Predicting changes in binding free energy () is a vital task in protein engineering and protein-protein interaction (PPI) engineering for drug discovery. Previous works have o…
Edge Prompt Tuning for Graph Neural Networks
Xingbo Fu, Yinhan He, Jundong Li
Pre-training powerful Graph Neural Networks (GNNs) with unlabeled graph data in a self-supervised manner has emerged as a prominent technique in recent years. However, inevitable o…
Graph Neural Networks Are More Than Filters: Revisiting and Benchmarking from A Spectral Perspective
Yushun Dong, Patrick Soga, Yinhan He +2
Graph Neural Networks (GNNs) have achieved remarkable success in various graph-based learning tasks. While their performance is often attributed to the powerful neighborhood aggreg…
Virtual Nodes Can Help: Tackling Distribution Shifts in Federated Graph Learning
Xingbo Fu, Zihan Chen, Yinhan He +4
Federated Graph Learning (FGL) enables multiple clients to jointly train powerful graph learning models, e.g., Graph Neural Networks (GNNs), without sharing their local graph data…