activity
20232025
most citedDynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

53 citations · 75 across the 6 of their papers we have counts for

collaborators

6 papers

q-bio.OT2025

Toward AI-Ready Medical Imaging Data

Milen Nikolov, Edilberto Amorim, J Harry Caufield +9

Medical imaging data plays a vital role in disease diagnosis, monitoring, and clinical research discovery. Biomedical data managers and clinical researchers must navigate a complex…

cs.DB2025★ 5 cited

LinkML: An Open Data Modeling Framework

Sierra A. T. Moxon, Harold Solbrig, Nomi L. Harris +33

Scientific research relies on well-structured, standardized data; however, much of it is stored in formats such as free-text lab notebooks, non-standardized spreadsheets, or data r…

cs.CL2024★ 8 cited

CurateGPT: A flexible language-model assisted biocuration tool

Harry Caufield, Carlo Kroll, Shawn T O'Neil +10

Effective data-driven biomedical discovery requires data curation: a time-consuming process of finding, organizing, distilling, integrating, interpreting, annotating, and validatin…

cs.DB2024★ 9 cited

A Change Language for Ontologies and Knowledge Graphs

Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat +9

Ontologies and knowledge graphs (KGs) are general-purpose computable representations of some domain, such as human anatomy, and are frequently a crucial part of modern information…

cs.LG2024

The Artificial Intelligence Ontology: LLM-assisted construction of AI concept hierarchies

Marcin P. Joachimiak, Mark A. Miller, J. Harry Caufield +5

The Artificial Intelligence Ontology (AIO) is a systematization of artificial intelligence (AI) concepts, methodologies, and their interrelations. Developed via manual curation, wi…

cs.AI2023★ 53 cited

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Sabrina Toro, Anna V Anagnostopoulos, Sue Bello +27

Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in…