3 papers
cs.CV2025
Learning Relative Gene Expression Trends from Pathology Images in Spatial Transcriptomics
Kazuya Nishimura, Haruka Hirose, Ryoma Bise +2
Gene expression estimation from pathology images has the potential to reduce the RNA sequencing cost. Point-wise loss functions have been widely used to minimize the discrepancy be…
cs.LG2025
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection
Kaito Shiku, Kazuya Nishimura, Shinnosuke Matsuo +2
Spatial transcriptomics (ST) is a novel technology that enables the observation of gene expression at the resolution of individual spots within pathological tissues. ST quantifies…
cs.CV2025
Towards Spatial Transcriptomics-guided Pathological Image Recognition with Batch-Agnostic Encoder
Kazuya Nishimura, Ryoma Bise, Yasuhiro Kojima
Spatial transcriptomics (ST) is a novel technique that simultaneously captures pathological images and gene expression profiling with spatial coordinates. Since ST is closely relat…