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cs.LG2025
Sequence-to-Image Transformation for Sequence Classification Using Rips Complex Construction and Chaos Game Representation
Sarwan Ali, Taslim Murad, Imdadullah Khan
Traditional feature engineering approaches for molecular sequence classification suffer from sparsity issues and computational complexity, while deep learning models often underper…
cs.LG2025
When do cheap embeddings beat protein language models? A theoretically-grounded hashing sketch for biological sequence classification
Sarwan Ali, Taslim Murad, Imdadullah Khan +1
\textbf{Motivation:} Pre-trained protein language models (PLMs) such as ESM-2 have become the default representation for biological sequence tasks, but they are computationally hea…