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cs.LG2026
AutoSchema: Live Schema Grounding for Agentic Text-to-Sparql over Heterogeneous Knowledge Graphs
Yiming Zhang, Koji Tsuda
Life science knowledge graphs make large collections of structured data available through SPARQL, but each resource uses its own schema, identifiers, and links. TogoMCP helps langu…
cs.LG2025
Exploring Protein Language Model Architecture-Induced Biases for Antibody Comprehension
Mengren, Liu, Yixiang Zhang +2
Recent advances in protein language models (PLMs) have demonstrated remarkable capabilities in understanding protein sequences. However, the extent to which different model archite…
cs.LG2025★ 2 cited
NbBench: Benchmarking Language Models for Comprehensive Nanobody Tasks
Yiming Zhang, Koji Tsuda
Nanobodies -- single-domain antibody fragments derived from camelid heavy-chain-only antibodies -- exhibit unique advantages such as compact size, high stability, and strong bindin…