30 citations · 30 across the 3 of their papers we have counts for
3 papers
UNAAGI: Atom-Level Diffusion for Generating Non-Canonical Amino Acid Substitutions
Han Tang, Wouter Boomsma, Alexander Tong
A central challenge in structural biology is identifying beneficial amino acid substitutions, a problem that underpins both mutational effect prediction and protein engineering. Re…
Gene finding revisited: improved robustness through structured decoding from learned embeddings
Frederikke I. Marin, Dennis Pultz, Wouter Boomsma
Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw ge…
BEND: Benchmarking DNA Language Models on biologically meaningful tasks
Frederikke Isa Marin, Felix Teufel, Marc Horlacher +4
The genome sequence contains the blueprint for governing cellular processes. While the availability of genomes has vastly increased over the last decades, experimental annotation o…