8 citations · 16 across the 10 of their papers we have counts for
4 papers · 1 filter
Structure-guided taxonomic placement of divergent RNA viruses with ViraClass
Sheng Xu, Wenxuan Huang, Shutong Yue +8
Metatranscriptomic sequencing has expanded our knowledge of the RNA virosphere far more rapidly than novel viruses can be taxonomically classified. Taxonomic assignment above the f…
Accurate de novo sequencing of the modified proteome with OmniNovo
Yuhan Chen, Shang Qu, Zhiqiang Gao +13
Post-translational modifications (PTMs) serve as a dynamic chemical language regulating protein function, yet current proteomic methods remain blind to a vast portion of the modifi…
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
Yuchen Ren, Zhiyuan Chen, Lifeng Qiao +10
RNA plays a pivotal role in translating genetic instructions into functional outcomes, underscoring its importance in biological processes and disease mechanisms. Despite the emerg…
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing
Zhi Jin, Sheng Xu, Xiang Zhang +6
De novo peptide sequencing from mass spectrometry (MS) data is a critical task in proteomics research. Traditional de novo algorithms have encountered a bottleneck in accuracy due…