2 papers
q-bio.QM2026
muxvizpy: a Python library for the analysis of multilayer biological networks
Matteo Baldan, Francesco Zambelli, Andrea Valsecchi +4
Biological systems are inherently multilayered: the same entities---genes, cells, or bacterial species---participate simultaneously in qualitatively distinct types of interactions,…
q-bio.GN2026
Integrating gene regulatory priors into Transformer attention with scTransformer for interpretable scRNA-seq analysis
Mikele Milia, Louis Fabrice Tshimanga, Henning Mueller +2
Motivation: Transformer-based models are increasingly applied to large-scale single-cell transcriptomics, showing strong performance through self-supervised learning on millions of…