4 papers
Evaluating Agentic Bioinformatics through Function, Evidence, and Validation
Phuc Pham, Truong-Son Hy
Large language model agents increasingly plan, execute, and interpret biological analyses, yet fluent responses, successful tool calls, and benchmark performance alone do not estab…
SWE-Bench++: A Framework for the Scalable Generation of Software Engineering Benchmarks from Open-Source Repositories
Lilin Wang, Lucas Ramalho, Alan Celestino +6
Benchmarks like SWE-bench have standardized the evaluation of Large Language Models (LLMs) on repository-level software engineering tasks. However, these efforts remain limited by…
Ar2Can: An Architect and an Artist Leveraging a Canvas for Multi-Human Generation
Shubhankar Borse, Phuc Pham, Farzad Farhadzadeh +6
Despite recent advances in personalized image generation, existing models consistently fail to produce reliable multi-human scenes, often merging or losing facial identity. We pres…
LINKER: Learning Interactions Between Functional Groups and Residues With Chemical Knowledge-Enhanced Reasoning and Explainability
Phuc Pham, Viet Thanh Duy Nguyen, Truong-Son Hy
Accurate identification of interactions between protein residues and ligand functional groups is essential to understand molecular recognition and guide rational drug design. Exist…