4 papers
Dissipation-Reliability Tradeoff for Stochastic CMOS Bits in Series
Cathryn P. Murphy, Schuyler B. Nicholson, Nahuel Freitas +2
Physical instantiations of a bit of information are subject to thermal noise that can trigger unintended bit-flip errors. Bits implemented with CMOS technology typically operate in…
Thermodynamics of large-scale chemical reaction networks
Schuyler B. Nicholson, Luis Pedro García-Pintos
Chemical and biological networks can describe a wide variety of processes, from gene regulatory networks to biochemical oscillations. Modeled by chemical master equations, these pr…
Chemical master equation parameter exploration using DMRG
John P. Zima, Schuyler B. Nicholson, Todd R. Gingrich
Well-mixed chemical reaction networks (CRNs) contain many distinct chemical species with copy numbers that fluctuate in correlated ways. While those correlations are typically moni…
From high-dimensional committors to reactive insights
Nils E. Strand, Schuyler B. Nicholson, Hadrien Vroylandt +1
Transition path theory (TPT) offers a powerful formalism for extracting the rate and mechanism of rare dynamical transitions between metastable states. Most applications of TPT eit…