3 papers
q-bio.PE2025
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
Samir Bhatt, John Sabol, Papri Dey +3
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally…
cs.LG2025
Tropical Attention: Neural Algorithmic Reasoning for Combinatorial Algorithms
Baran Hashemi, Kurt Pasque, Chris Teska +1
Can algebraic geometry enhance the sharpness, robustness, and interpretability of modern neural reasoning models by equipping them with a mathematically grounded inductive bias? To…
math.CO2025
Tropical Fermat-Weber Points over Spaces of -Ultrametrics
Shelby Cox, John Sabol, Roan Talbut +1
We extend reconstruction methods for phylogenetic trees to ultrametrics of arbitrary matroids and study the stability of these data analysis methods in the combinatorial spirit of…