6 papers · 1 filter
Unified Brain Surface and Volume Registration
S. Mazdak Abulnaga, Andrew Hoopes, Malte Hoffmann +6
Accurate registration of brain MRI scans is fundamental for cross-subject analysis in neuroscientific studies. This involves aligning both the cortical surface of the brain and the…
Pancakes: Consistent Multi-Protocol Image Segmentation Across Biomedical Domains
Marianne Rakic, Siyu Gai, Etienne Chollet +2
A single biomedical image can be meaningfully segmented in multiple ways, depending on the desired application. For instance, a brain MRI can be segmented according to tissue types…
AtlasMorph: Learning conditional deformable templates for brain MRI
Marianne Rakic, Andrew Hoopes, S. Mazdak Abulnaga +3
Deformable templates, or atlases, are images that represent a prototypical anatomy for a population, and are often enhanced with probabilistic anatomical label maps. They are commo…
MultiMorph: On-demand Atlas Construction
S. Mazdak Abulnaga, Andrew Hoopes, Neel Dey +5
We present MultiMorph, a fast and efficient method for constructing anatomical atlases on the fly. Atlases capture the canonical structure of a collection of images and are essenti…
MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance
Hallee E. Wong, Jose Javier Gonzalez Ortiz, John Guttag +1
Medical researchers and clinicians often need to perform novel segmentation tasks on a set of related images. Existing methods for segmenting a new dataset are either interactive,…
Learning General-Purpose Biomedical Volume Representations using Randomized Synthesis
Neel Dey, Benjamin Billot, Hallee E. Wong +5
Current volumetric biomedical foundation models struggle to generalize as public 3D datasets are small and do not cover the broad diversity of medical procedures, conditions, anato…