20 citations · 47 across the 8 of their papers we have counts for
9 papers
A Fully Automatic Pipeline for 3D Dendrite Instance Segmentation in SBF-SEM
Zewen Zhuo, Ilya Belevich, Eija Jokitalo +2
Accurate three-dimensional (3D) reconstruction of individual dendrites in serial block-face scanning electron microscopy (SBF-SEM) is essential for quantifying structural plasticit…
SomaNet: Weakly Supervised Learning for Instance Soma Segmentation in 3D Electron Microscopy with Partial Annotations
Mohammad Khateri, Morteza Ghahremani, Jussi Tohka +1
Soma instance segmentation, i.e., identifying and delineating individual cell somas as distinct instances, is crucial for cellular analysis and connectomic reconstruction. Three-di…
USFetal: Tools for Fetal Brain Ultrasound Compounding
Mohammad Khateri, Morteza Ghahremani, Sergio Valencia +5
Ultrasound offers a safe, cost-effective, and widely accessible technology for fetal brain imaging, making it especially suitable for routine clinical use. However, it suffers from…
MRI Super-Resolution with Deep Learning: A Comprehensive Survey
Mohammad Khateri, Serge Vasylechko, Morteza Ghahremani +9
High-resolution (HR) magnetic resonance imaging (MRI) is crucial for many clinical and research applications. However, achieving it remains costly and constrained by technical trad…
Scattering approach to diffusion quantifies axonal damage in brain injury
Ali Abdollahzadeh, Ricardo Coronado-Leija, Hong-Hsi Lee +3
Early diagnosis and noninvasive monitoring of neurological disorders require sensitivity to elusive cellular-level alterations that occur much earlier than volumetric changes obser…
Segment Anything for Dendrites from Electron Microscopy
Zewen Zhuo, Ilya Belevich, Ville Leinonen +4
Segmentation of cellular structures in electron microscopy (EM) images is fundamental to analyzing the morphology of neurons and glial cells in the healthy and diseased brain tissu…
No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy
Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra +1
The inability to acquire clean high-resolution (HR) electron microscopy (EM) images over a large brain tissue volume hampers many neuroscience studies. To address this challenge, w…
Volume electron microscopy in injured rat brain validates white matter microstructure metrics from diffusion MRI
Ricardo Coronado-Leija, Ali Abdollahzadeh, Hong-Hsi Lee +8
Biophysical modeling of diffusion MRI (dMRI) offers the exciting potential of bridging the gap between the macroscopic MRI resolution and microscopic cellular features, effectively…
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy
Andrea Behanova, Ali Abdollahzadeh, Ilya Belevich +3
Background and Objective: Advances in electron microscopy (EM) now allow three-dimensional (3D) imaging of hundreds of micrometers of tissue with nanometer-scale resolution, provid…