214 citations · 378 across the 9 of their papers we have counts for
3 papers · 1 filter
Coarse-grained modelling of supercoiled RNA
Christian Matek, Petr Šulc, Ferdinando Randisi +2
We study the behaviour of double-stranded RNA under twist and tension using oxRNA, a recently developed coarse-grained model of RNA. Introducing explicit salt-dependence into the m…
Coarse-graining DNA for simulations of DNA nanotechnology
Jonathan P. K. Doye, Thomas E. Ouldridge, Ard A. Louis +8
To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained description. Here we provide an overview of different approaches to such coar…
DNA cruciform arms nucleate through a correlated but non-synchronous cooperative mechanism
Christian Matek, Thomas E. Ouldridge, Adam Levy +2
Inverted repeat (IR) sequences in DNA can form non-canonical cruciform structures to relieve torsional stress. We use Monte Carlo simulations of a recently developed coarse-grained…