activity
20242026
most citedClinical ModernBERT: An efficient and long context encoder for biomedical text

1 citations · 1 across the 4 of their papers we have counts for

collaborators

7 papers

cs.LG2026

Wavelet-Driven Masked Multiscale Reconstruction for PPG Foundation Models

Megha Thukral, Cyrus Tanade, Simon A. Lee +10

Wearable foundation models have the potential to transform digital health by learning transferable representations from large-scale biosignals collected in everyday settings. While…

cs.LG2025

Reflections from Research Roundtables at the Conference on Health, Inference, and Learning (CHIL) 2025

Emily Alsentzer, Marie-Laure Charpignon, Bill Chen +90

The 6th Annual Conference on Health, Inference, and Learning (CHIL 2025), hosted by the Association for Health Learning and Inference (AHLI), was held in person on June 25-27, 2025…

cs.LG2025

HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Series

Simon A. Lee, Cyrus Tanade, Hao Zhou +13

Wearable sensors provide abundant physiological time series, yet the principles governing their predictive utility remain unclear. We hypothesize that temporal resolution is a fund…

eess.IV2025

Raptor: Scalable Train-Free Embeddings for 3D Medical Volumes Leveraging Pretrained 2D Foundation Models

Ulzee An, Moonseong Jeong, Simon A. Lee +3

Current challenges in developing foundational models for volumetric imaging data, such as magnetic resonance imaging (MRI), stem from the computational complexity of training state…

cs.CL2025

A Case Study Exploring the Current Landscape of Synthetic Medical Record Generation with Commercial LLMs

Yihan Lin, Zhirong Bella Yu, Simon Lee

Synthetic Electronic Health Records (EHRs) offer a valuable opportunity to create privacy preserving and harmonized structured data, supporting numerous applications in healthcare.…

cs.CL20251 cited

Clinical ModernBERT: An efficient and long context encoder for biomedical text

Simon A. Lee, Anthony Wu, Jeffrey N. Chiang

We introduce Clinical ModernBERT, a transformer based encoder pretrained on large scale biomedical literature, clinical notes, and medical ontologies, incorporating PubMed abstract…