activity
20242026
most citedMolecule Generation with Fragment Retrieval Augmentation

1 citations · 1 across the 4 of their papers we have counts for

collaborators

10 papers

cs.LG2026

Demystifying Data-Driven Probabilistic Medium-Range Weather Forecasting

Jean Kossaifi, Nikola Kovachki, Morteza Mardani +15

The recent revolution in data-driven methods for weather forecasting has lead to a fragmented landscape of complex, bespoke architectures and training strategies, obscuring the fun…

q-bio.BM2025

Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design

Danny Reidenbach, Zhonglin Cao, Zuobai Zhang +8

High-quality training datasets are crucial for the development of effective protein design models, but existing synthetic datasets often include unfavorable sequence-structure pair…

cs.LG2025

Exploring Synthesizable Chemical Space with Iterative Pathway Refinements

Seul Lee, Karsten Kreis, Srimukh Prasad Veccham +5

A well-known pitfall of molecular generative models is that they are not guaranteed to generate synthesizable molecules. Existing solutions for this problem often struggle to effec…

cs.LG2025

Efficient Molecular Conformer Generation with SO(3)-Averaged Flow Matching and Reflow

Zhonglin Cao, Mario Geiger, Allan dos Santos Costa +6

Fast and accurate generation of molecular conformers is desired for downstream computational chemistry and drug discovery tasks. Currently, training and sampling state-of-the-art d…

cs.LG2025

Elucidated Rolling Diffusion Models for Probabilistic Forecasting of Complex Dynamics

Salva Rühling Cachay, Miika Aittala, Karsten Kreis +4

Diffusion models are a powerful tool for probabilistic forecasting, yet most applications in high-dimensional complex systems predict future states individually. This approach stru…

q-bio.QM2025

Hierarchical protein backbone generation with latent and structure diffusion

Jason Yim, Marouane Jaakik, Ge Liu +5

We propose a hierarchical protein backbone generative model that separates coarse and fine-grained details. Our approach called LSD consists of two stages: sampling latents which a…