8 citations · 10 across the 6 of their papers we have counts for
7 papers
GRAINS: Storage-Aware Algorithm-Architecture Co-Design Enabling High-Performance and Low-Cost Graph-Based Genome Analysis
Nika Mansouri Ghiasi, Harun Mustafa, Talu Güloglu +8
Graph-based representations of genome sequences have emerged as a powerful approach for representing massive genomic databases in an expressive and efficient way. Despite their ben…
Architecture for Health Initiative (Arch4Health): Computational Challenges in Health-Related Applications and the Role of Computer Architecture in Addressing Them
Nika Mansouri Ghiasi, Konstantina Koliogeorgi, Onur Mutlu
Recent biotechnological advances enable high-throughput, low-cost, and accurate biological data generation. This wealth of data enables unique opportunities for advancing healthcar…
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping
Julien Eudine, Chu Li, Zhuo Cheng +11
Genome sequencing has become a central focus in computational biology. A genome study typically begins with sequencing, which produces millions to billions of short DNA fragments k…
Revelator: Rapid Data Fetching via System-Software-Guided Hash-based Speculative Address Translation
Konstantinos Kanellopoulos, Konstantinos Sgouras, Harsh Songara +7
Address translation is a major performance bottleneck in modern computing systems. Predicting the physical address (PA) of requested data before address translation completes can h…
MARS: Processing-In-Memory Acceleration of Raw Signal Genome Analysis Inside the Storage Subsystem
Melina Soysal, Konstantina Koliogeorgi, Can Firtina +8
Raw signal genome analysis (RSGA) has emerged as a promising approach to enable real-time genome analysis by directly analyzing raw electrical signals. However, rapid advancements…
Processing-in-memory for genomics workloads
William Andrew Simon, Leonid Yavits, Konstantina Koliogeorgi +12
Low-cost, high-throughput DNA and RNA sequencing (HTS) data is the backbone of the life sciences. Genome sequencing is now becoming a part of Predictive, Preventive, Personalized,…