4 papers
The 1/3 Geometric Constant: Scale Invariance and the Origin of 'Missing Energy' in 3D Quantum Fragmentation
Jinzhen Zhu
We report the discovery of a universal geometric constraint on the detection of kinetic energy release (KER) in three-dimensional quantum fragmentation. By analyzing the dissociati…
Resonant Coupling Between Electromagnetic Waves and Protein Conformational Dynamics Revealed by Molecular Dynamics Simulations
Jiafei Chen, Yuanyuan Feng, Jingzhi Feng +3
The biological effects of electromagnetic fields on proteins remain controversial beyond well-established thermal mechanisms, particularly with respect to frequency-dependent respo…
Towards a Universal Foundation Model for Protein Dynamics: A Multi-Chain Tree-Structured Framework with Transformer Propagators
Jinzhen Zhu
Simulating large-scale protein dynamics using traditional all-atom molecular dynamics (MD) remains computationally prohibitive. We present a unified, universal framework for coarse…
A unified framework for coarse grained molecular dynamics of proteins with high-fidelity reconstruction
Jinzhen Zhu
Simulating large proteins using traditional molecular dynamics (MD) is computationally demanding. To address this challenge, we propose a novel tree-structured coarse-grained model…