5 papers
Overview of BioASQ 2026: The fourteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +18
This paper presents an overview of the fourteenth edition of the BioASQ challenge, organized in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2026. BioASQ i…
TWIX: a Two-Stage Approach for End-To-End Named Entity Recognition and Relation Extraction
Marco Martinelli, Laura Menotti
The exponential growth of scientific publications calls for automatic Information Extraction (IE) systems to support knowledge discovery. In this context, the GutBrainIE benchmark…
A Domain-Specific Curated Benchmark for Entity and Document-Level Relation Extraction
Marco Martinelli, Stefano Marchesin, Vanessa Bonato +6
Information Extraction (IE), encompassing Named Entity Recognition (NER), Named Entity Linking (NEL), and Relation Extraction (RE), is critical for transforming the rapidly growing…
Efficient and Reliable Estimation of Named Entity Linking Quality: A Case Study on GutBrainIE
Marco Martinelli, Stefano Marchesin, Gianmaria Silvello
Named Entity Linking (NEL) is a core component of biomedical Information Extraction (IE) pipelines, yet assessing its quality at scale is challenging due to the high cost of expert…
Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +17
This is an overview of the thirteenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2025. BioASQ is a series of internati…