3 papers
q-bio.QM2009
Solving Maximum Clique Problem for Protein Structure Similarity
Noël Malod-Dognin, Rumen Andonov, Nicola Yanev
A basic assumption of molecular biology is that proteins sharing close three-dimensional (3D) structures are likely to share a common function and in most cases derive from a same…
q-bio.QM2007
Towards Structural Classification of Proteins based on Contact Map Overlap
Rumen Andonov, Nicola Yanev, Noël Malod-Dognin
A multitude of measures have been proposed to quantify the similarity between protein 3-D structure. Among these measures, contact map overlap (CMO) maximization deserved sustained…
q-bio.QM2006
Lagrangian Approaches for a class of Matching Problems in Computational Biology
Nicola Yanev, Rumen Andonov, Philippe Veber +1
This paper presents efficient algorithms for solving the problem of aligning a protein structure template to a query amino-acid sequence, known as protein threading problem. We con…