47 citations · 57 across the 6 of their papers we have counts for
7 papers
RPCA: a Resolved PSF reconstruction method for undersampled images
Lin Nie, Huanyuan Shan, Guoliang Li +11
The Point-Spread Function (PSF) is a critical component in various astrophysical research areas, including galaxy morphology, photometric redshift determination, and weak lensing s…
cubic: CUDA-accelerated 3D Bioimage Computing
Alexandr A. Kalinin, Anne E. Carpenter, Shantanu Singh +1
Quantitative analysis of multidimensional biological images is useful for understanding complex cellular phenotypes and accelerating advances in biomedical research. As modern micr…
Progress and new challenges in image-based profiling
Erik Serrano, John Peters, Jesko Wagner +19
For over two decades, image-based profiling has revolutionized cell phenotype analysis. Image-based profiling processes rich, high-throughput, microscopy data into thousands of unb…
Foreground-aware Virtual Staining for Accurate 3D Cell Morphological Profiling
Alexandr A. Kalinin, Paula Llanos, Theresa Maria Sommer +11
Microscopy enables direct observation of cellular morphology in 3D, with transmitted-light methods offering low-cost, minimally invasive imaging and fluorescence microscopy providi…
cp_measure: API-first feature extraction for image-based profiling workflows
Alán F. Muñoz, Tim Treis, Alexandr A. Kalinin +4
Biological image analysis has traditionally focused on measuring specific visual properties of interest for cells or other entities. A complementary paradigm gaining increasing tra…
Improving Acne Image Grading with Label Distribution Smoothing
Kirill Prokhorov, Alexandr A. Kalinin
Acne, a prevalent skin condition, necessitates precise severity assessment for effective treatment. Acne severity grading typically involves lesion counting and global assessment.…
Reproducible image-based profiling with Pycytominer
Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten +25
Advances in high-throughput microscopy have enabled the rapid acquisition of large numbers of high-content microscopy images. Whether by deep learning or classical algorithms, imag…