117 citations · 924 across the 105 of their papers we have counts for
4 papers · 1 filter
Multipermutation Codes in the Ulam Metric for Nonvolatile Memories
Farzad Farnoud, Olgica Milenkovic
We address the problem of multipermutation code design in the Ulam metric for novel storage applications. Multipermutation codes are suitable for flash memory where cell charges ma…
MetaPar: Metagenomic Sequence Assembly via Iterative Reclassification
Minji Kim, Jonathan G. Ligo, Amin Emad +3
We introduce a parallel algorithmic architecture for metagenomic sequence assembly, termed MetaPar, which allows for significant reductions in assembly time and consequently enable…
MCUIUC -- A New Framework for Metagenomic Read Compression
Jonathan G. Ligo, Minji Kim, Amin Emad +2
Metagenomics is an emerging field of molecular biology concerned with analyzing the genomes of environmental samples comprising many different diverse organisms. Given the nature o…
Computing Similarity Distances Between Rankings
Farzad Farnoud, Lili Su, Gregory J. Puleo +1
We address the problem of computing distances between rankings that take into account similarities between candidates. The need for evaluating such distances is governed by applica…