127 citations · 138 across the 6 of their papers we have counts for
7 papers
DNA Origami Nanostructures Observed in Transmission Electron Microscopy Images can be Characterized through Convolutional Neural Networks
Xingfei Wei, Qiankun Mo, Chi Chen +2
Artificial intelligence (AI) models remain an emerging strategy to accelerate materials design and development. We demonstrate that convolutional neural network (CNN) models can ch…
Isometric Hamming embeddings of weighted graphs
Joseph Berleant, Kristin Sheridan, Anne Condon +2
A mapping from the vertex set of one graph to another graph is an isometric embedding if the shortest path distance between any two vertices in equal…
Factorization and pseudofactorization of weighted graphs
Kristin Sheridan, Joseph Berleant, Mark Bathe +2
For unweighted graphs, finding isometric embeddings is closely related to decompositions of into Cartesian products of smaller graphs. When is isomorphic to a Cartesian gra…
Conformational Dynamics of Supramolecular Protein Assemblies in the EMDB
Do-Nyun Kim, Cong-Tri Nguyen, Mark Bathe
The Electron Microscopy Data Bank (EMDB) is a rapidly growing repository for the dissemination of structural data from single-particle reconstructions of supramolecular protein ass…
A Finite Element framework for computation of protein normal modes and mechanical response
Mark Bathe
A coarse-grained computational procedure based on the Finite Element Method is proposed to calculate the normal modes and mechanical response of proteins and their supramolecular a…
Statistical Mechanics of Semiflexible Bundles of Wormlike Polymer Chains
Claus Heussinger, Mark Bathe, Erwin Frey
We demonstrate that a semiflexible bundle of wormlike chains exhibits a state-dependent bending stiffness that alters fundamentally its scaling behavior with respect to the standar…