204 citations · 675 across the 44 of their papers we have counts for
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Delayed rejection Hamiltonian Monte Carlo for sampling multiscale distributions
Chirag Modi, Alex Barnett, Bob Carpenter
The efficiency of Hamiltonian Monte Carlo (HMC) can suffer when sampling a distribution with a wide range of length scales, because the small step sizes needed for stability in hig…
Quadrature by fundamental solutions: kernel-independent layer potential evaluation for large collections of simple objects
David B. Stein, Alex H. Barnett
Well-conditioned boundary integral methods for the solution of elliptic boundary value problems (BVPs) are powerful tools for static and dynamic physical simulations. When there ar…
cuFINUFFT: a load-balanced GPU library for general-purpose nonuniform FFTs
Yu-hsuan Shih, Garrett Wright, Joakim Andén +2
Nonuniform fast Fourier transforms dominate the computational cost in many applications including image reconstruction and signal processing. We thus present a general-purpose GPU-…
A Bayesian approach for extracting free energy profiles from cryo-electron microscopy experiments using a path collective variable
Julian Giraldo-Barreto, Sebastian Ortiz, Erik H. Thiede +4
Cryo-electron microscopy (cryo-EM) extracts single-particle density projections of individual biomolecules. Although cryo-EM is widely used for 3D reconstruction, due to its single…