258 citations · 565 across the 5 of their papers we have counts for
5 papers
A robust approach to estimating rates from time-correlation functions
John D. Chodera, Phillip J. Elms, William C. Swope +5
While seemingly straightforward in principle, the reliable estimation of rate constants is seldom easy in practice. Numerous issues, such as the complication of poor reaction coord…
Single-molecule derivation of salt dependent base-pair free energies in DNA
J. M. Huguet, C. V. Bizarro, N. Forns +3
Accurate knowledge of the thermodynamic properties of nucleic acids is crucial to predicting their structure and stability. To date most measurements of base-pair free energies in…
Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments
M. Manosas, J. -D. Wen, P. T. X. Li +4
By exerting mechanical force it is possible to unfold/refold RNA molecules one at a time. In a small range of forces, an RNA molecule can hop between the folded and the unfolded st…
Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results
J. -D. Wen, M. Manosas, P. T. X. Li +4
Experimental variables of optical tweezers instrumentation that affect RNA folding/unfolding kinetics were investigated. A model RNA hairpin, P5ab, was attached to two micron-sized…
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise
Paul Maragakis, Felix Ritort, Carlos Bustamante +2
The Jarzynski equality and the fluctuation theorem relate equilibrium free energy differences to non-equilibrium measurements of the work. These relations extend to single-molecule…