5 citations · 9 across the 4 of their papers we have counts for
4 papers
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
ChenRui Duan, Zelin Zang, Siyuan Li +2
Phylogenetic trees elucidate evolutionary relationships among species, but phylogenetic inference remains challenging due to the complexity of combining continuous (branch lengths)…
A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends
Zelin Zang, Yongjie Xu, Chenrui Duan +4
Biological tree (BioTree) analysis is a foundational tool in biology, enabling the exploration of evolutionary and differentiation relationships among organisms, genes, and cells.…
FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics
ChenRui Duan, Zelin Zang, Yongjie Xu +6
Metagenomic data, comprising mixed multi-species genomes, are prevalent in diverse environments like oceans and soils, significantly impacting human health and ecological functions…
Must: Maximizing Latent Capacity of Spatial Transcriptomics Data
Zelin Zang, Liangyu Li, Yongjie Xu +5
Spatial transcriptomics (ST) technologies have revolutionized the study of gene expression patterns in tissues by providing multimodality data in transcriptomic, spatial, and morph…