activity
20232026
most citedIdentifying latent disease factors differently expressed in patient subgroups using group factor analysis

1 citations · 2 across the 23 of their papers we have counts for

collaborators

26 papers

cs.LG2026

In-Context Batch Black-box Optimization via Flow Matching

Quoc-Anh Hoang Nguyen, Xinyu Zhang, Daolang Huang +2

Batch black-box optimization is important for expensive systems where many candidates can be evaluated in parallel, yet only a few rounds of evaluation are affordable. In this regi…

cs.LG2026

Decoupled Conformal Optimisation: Efficient Prediction Sets via Independent Tuning and Calibration

Fanyi Wu, Lihua Niu, Samuel Kaski +1

Bayesian conformal optimisation methods often use the same held-out data both to search for efficient prediction sets and to certify coverage or risk. This coupling is natural for…

cs.LG2026

Elicitation-Augmented Bayesian Optimization

Alvar Haltia, Ville Hyvönen, Samuel Kaski

Human-in-the-loop Bayesian optimization (HITL BO) methods utilize human expertise to improve the sample-efficiency of BO. Most HITL BO methods assume that a domain expert can quant…

cs.LG2026

Online Sharp-Calibrated Bayesian Optimization

Marshal Arijona Sinaga, Julien Martinelli, Teemu Turpeinen +1

Bayesian optimization (BO) is a widely used framework for optimizing expensive black-box functions, commonly based on Gaussian process (GP) surrogate models. Its effectiveness reli…

cs.LG2026

Point-Identification of a Robust Predictor Under Latent Shift with Imperfect Proxies

Zahra Rahiminasab, Reza Soumi, Arto Klami +1

Addressing the domain adaptation problem becomes more challenging when distribution shifts across domains stem from latent confounders that affect both covariates and outcomes. Exi…

cs.LG2026

Bayesian Meta-Learning with Expert Feedback for Task-Shift Adaptation through Causal Embeddings

Lotta Mäkinen, Jorge Loría, Samuel Kaski

Meta-learning methods perform well on new within-distribution tasks but often fail when adapting to out-of-distribution target tasks, where transfer from source tasks can induce ne…

cs.LG2026

Bayesian Conformal Prediction as a Decision Risk Problem

Fanyi Wu, Veronika Lohmanova, Samuel Kaski +1

We propose Bayesian Conformal Prediction (BCP), a framework that combines Bayesian posterior predictive distributions with PAC-style conformal risk control to produce prediction se…

cs.LG2025

In-Context Multi-Objective Optimization

Xinyu Zhang, Conor Hassan, Julien Martinelli +2

Balancing competing objectives is omnipresent across disciplines, from drug design to autonomous systems. Multi-objective Bayesian optimization is a promising solution for such exp…

stat.ML2025

Robust Experimental Design via Generalised Bayesian Inference

Yasir Zubayr Barlas, Sabina J. Sloman, Samuel Kaski

Bayesian optimal experimental design is a principled framework for conducting experiments that leverages Bayesian inference to quantify how much information one can expect to gain…

stat.ML2025

Efficient Autoregressive Inference for Transformer Probabilistic Models

Conor Hassan, Nasrulloh Loka, Cen-You Li +6

Set-based transformer models for amortized probabilistic inference and meta-learning, such as neural processes, prior-fitted networks, and tabular foundation models, excel at singl…

cs.LG2025

Incorporating Expert Knowledge into Bayesian Causal Discovery of Mixtures of Directed Acyclic Graphs

Zachris Björkman, Jorge Loría, Sophie Wharrie +1

Bayesian causal discovery benefits from prior information elicited from domain experts, and in heterogeneous domains any prior knowledge would be badly needed. However, so far prio…

stat.ML2025

Representative, Informative, and De-Amplifying: Requirements for Robust Bayesian Active Learning under Model Misspecification

Roubing Tang, Sabina J. Sloman, Samuel Kaski

In many science and industry settings, a central challenge is designing experiments under time and budget constraints. Bayesian Optimal Experimental Design (BOED) is a paradigm to…

stat.ML2025

ALINE: Joint Amortization for Bayesian Inference and Active Data Acquisition

Daolang Huang, Xinyi Wen, Ayush Bharti +2

Many critical applications, from autonomous scientific discovery to personalized medicine, demand systems that can both strategically acquire the most informative data and instanta…

cs.LG2025

Epistemic Errors of Imperfect Multitask Learners When Distributions Shift

Sabina J. Sloman, Michele Caprio, Samuel Kaski

Uncertainty-aware machine learners, such as Bayesian neural networks, output a quantification of uncertainty instead of a point prediction. We provide uncertainty-aware learners wi…

cs.LG2025

Robust and Computation-Aware Gaussian Processes

Marshal Arijona Sinaga, Julien Martinelli, Samuel Kaski

Gaussian processes (GPs) are widely used for regression and optimization tasks such as Bayesian optimization (BO) due to their expressiveness and principled uncertainty estimates.…

stat.ML2025

PABBO: Preferential Amortized Black-Box Optimization

Xinyu Zhang, Daolang Huang, Samuel Kaski +1

Preferential Bayesian Optimization (PBO) is a sample-efficient method to learn latent user utilities from preferential feedback over a pair of designs. It relies on a statistical s…

cs.LG2025★ 1 cited

Memento No More: Coaching AI Agents to Master Multiple Tasks via Hints Internalization

Minttu Alakuijala, Ya Gao, Georgy Ananov +4

As the general capabilities of artificial intelligence (AI) agents continue to evolve, their ability to learn to master multiple complex tasks through experience remains a key chal…

stat.ML2025

Amortized Bayesian Experimental Design for Decision-Making

Daolang Huang, Yujia Guo, Luigi Acerbi +1

Many critical decisions, such as personalized medical diagnoses and product pricing, are made based on insights gained from designing, observing, and analyzing a series of experime…

cs.LG2024

Towards modeling evolving longitudinal health trajectories with a transformer-based deep learning model

Hans Moen, Vishnu Raj, Andrius Vabalas +4

Health registers contain rich information about individuals' health histories. Here our interest lies in understanding how individuals' health trajectories evolve in a nationwide l…

cs.LG2024

Proxy-informed Bayesian transfer learning with unknown sources

Sabina J. Sloman, Julien Martinelli, Samuel Kaski

Generalization outside the scope of one's training data requires leveraging prior knowledge about the effects that transfer, and the effects that don't, between different data sour…

stat.ML2024★ 1 cited

Identifying latent disease factors differently expressed in patient subgroups using group factor analysis

Fabio S. Ferreira, John Ashburner, Arabella Bouzigues +33

In this study, we propose a novel approach to uncover subgroup-specific and subgroup-common latent factors addressing the challenges posed by the heterogeneity of neurological and…

stat.ML2024

Amortized Probabilistic Conditioning for Optimization, Simulation and Inference

Paul E. Chang, Nasrulloh Loka, Daolang Huang +3

Amortized meta-learning methods based on pre-training have propelled fields like natural language processing and vision. Transformer-based neural processes and their variants are l…

stat.ML2024

Cost-aware simulation-based inference

Ayush Bharti, Daolang Huang, Samuel Kaski +1

Simulation-based inference (SBI) is the preferred framework for estimating parameters of intractable models in science and engineering. A significant challenge in this context is t…

cs.RO2024

Video-Language Critic: Transferable Reward Functions for Language-Conditioned Robotics

Minttu Alakuijala, Reginald McLean, Isaac Woungang +4

Natural language is often the easiest and most convenient modality for humans to specify tasks for robots. However, learning to ground language to behavior typically requires impra…