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cs.DC2024★ 4 cited
Rapid GPU-Based Pangenome Graph Layout
Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du +6
Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for under…
cs.DC2024★ 3 cited
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
Yifan Li, Giulia Guidi
In generating large quantities of DNA data, high-throughput sequencing technologies require advanced bioinformatics infrastructures for efficient data analysis. k-mer counting, the…