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cs.LG2026
Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment
Yanjun Shao, Yundi Chen, Yashvi Patel +2
Pretrained biological language models expose per-token probability distributions through masked-token prediction, providing the likelihood interface central to sequence design, var…
cs.LG2026
FORGE: Fragment-Oriented Ranking and Generation for Context-Aware Molecular Optimization
Qingchuan Zhang, He Cao, Hao Li +6
Molecular optimization seeks to improve a molecule through small structural edits while preserving similarity to the starting compound. Recent language-model approaches typically t…