activity
20232026
most citedDo Deep Learning Models Really Outperform Traditional Approaches in Molecular Docking?

23 citations · 104 across the 24 of their papers we have counts for

collaborators
Showing cs.LGShow all

8 papers · 1 filter

cs.LG2026

Agentic-MatriBO: Capability-Compiled Agentic Bayesian Optimization for Materials and Chemical Design

Yu Zeng, Yuchuan Chen, Ziyue Zhang +5

Materials and chemical optimization must choose the next synthesis, characterization, or high-fidelity simulation from sequential observations under a limited budget. Large languag…

cs.LG2026

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models

Yi Xiong, Liang Xiong, Xiaohong Ji +4

Molecular property optimization is central to drug discovery, yet many deep learning methods rely on black-box scoring and offer limited control over scaffold preservation, often p…

cs.LG2026

On the Design of One-step Diffusion via Shortcutting Flow Paths

Haitao Lin, Peiyan Hu, Minsi Ren +5

Recent advances in few-step diffusion models have demonstrated their efficiency and effectiveness by shortcutting the probabilistic paths of diffusion models, especially in trainin…

cs.LG2025

MolReasoner: Toward Effective and Interpretable Reasoning for Molecular LLMs

Guojiang Zhao, Zixiang Lu, Yutang Ge +13

Large Language Models (LLMs) have shown impressive performance across various domains, but their ability to perform molecular reasoning remains underexplored. Existing methods most…

cs.LG2025

SynBridge: Bridging Reaction States via Discrete Flow for Bidirectional Reaction Prediction

Haitao Lin, Junjie Wang, Zhifeng Gao +5

The essence of a chemical reaction lies in the redistribution and reorganization of electrons, which is often manifested through electron transfer or the migration of electron pair…

cs.LG2025★ 1 cited

Unified Cross-Scale 3D Generation and Understanding via Autoregressive Modeling

Shuqi Lu, Haowei Lin, Lin Yao +6

3D structure modeling is essential across scales, enabling applications from fluid simulation and 3D reconstruction to protein folding and molecular docking. Yet, despite shared 3D…

cs.LG2025★ 3 cited

Intelligent System for Automated Molecular Patent Infringement Assessment

Yaorui Shi, Sihang Li, Taiyan Zhang +12

Automated drug discovery offers significant potential for accelerating the development of novel therapeutics by substituting labor-intensive human workflows with machine-driven pro…

cs.LG2024★ 8 cited

Uni-Mol2: Exploring Molecular Pretraining Model at Scale

Xiaohong Ji, Zhen Wang, Zhifeng Gao +4

In recent years, pretraining models have made significant advancements in the fields of natural language processing (NLP), computer vision (CV), and life sciences. The significant…