56 citations · 58 across the 6 of their papers we have counts for
7 papers
ARO: Aligned Representation learning for multi-Omics data
Amogh Singh, Yash Shah, Chiara D'Ercoli +4
The high cost of functional molecular assays, and prevalence of missing modalities and unmatched samples in computational biology, create significant barriers to comprehensive mult…
Theoretical Guarantees for Causal Discovery on Large Random Graphs
Mathieu Chevalley, Arash Mehrjou, Patrick Schwab
We investigate theoretical guarantees for the false-negative rate (FNR) -- the fraction of true causal edges whose orientation is not recovered, under single-variable random interv…
In-silico biological discovery with large perturbation models
Djordje Miladinovic, Tobias Höppe, Mathieu Chevalley +6
Data generated in perturbation experiments link perturbations to the changes they elicit and therefore contain information relevant to numerous biological discovery tasks -- from u…
Multi-megabase scale genome interpretation with genetic language models
Frederik Träuble, Lachlan Stuart, Andreas Georgiou +9
Understanding how molecular changes caused by genetic variation drive disease risk is crucial for deciphering disease mechanisms. However, interpreting genome sequences is challeng…
Efficient Differentiable Discovery of Causal Order
Mathieu Chevalley, Arash Mehrjou, Patrick Schwab
In the algorithm Intersort, Chevalley et al. (2024) proposed a score-based method to discover the causal order of variables in a Directed Acyclic Graph (DAG) model, leveraging inte…
Deriving Causal Order from Single-Variable Interventions: Guarantees & Algorithm
Mathieu Chevalley, Patrick Schwab, Arash Mehrjou
Targeted and uniform interventions to a system are crucial for unveiling causal relationships. While several methods have been developed to leverage interventional data for causal…
Real-time Prediction of COVID-19 related Mortality using Electronic Health Records
Patrick Schwab, Arash Mehrjou, Sonali Parbhoo +5
Coronavirus Disease 2019 (COVID-19) is an emerging respiratory disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with rapid human-to-human transmis…