8 papers
scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing
Ping Xu, Zaitian Wang, Zhirui Wang +5
Cell clustering is crucial for uncovering cellular heterogeneity in single-cell RNA sequencing (scRNA-seq) data by identifying cell types and marker genes. Despite its importance,…
Zero-Shot Human Mobility Forecasting via Large Language Model with Hierarchical Reasoning
Wenyao Li, Ran Zhang, Pengyang Wang +2
Human mobility forecasting is important for applications such as transportation planning, urban management, and personalized recommendations. However, existing methods often fail t…
scUnified: An AI-Ready Standardized Resource for Single-Cell RNA Sequencing Analysis
Ping Xu, Zaitian Wang, Zhirui Wang +7
Single-cell RNA sequencing (scRNA-seq) technology enables systematic delineation of cellular states and interactions, providing crucial insights into cellular heterogeneity. Buildi…
SciTopic: Enhancing Topic Discovery in Scientific Literature through Advanced LLM
Pengjiang Li, Zaitian Wang, Xinhao Zhang +4
Topic discovery in scientific literature provides valuable insights for researchers to identify emerging trends and explore new avenues for investigation, facilitating easier scien…
Distilling Closed-Source LLM's Knowledge for Locally Stable and Economic Biomedical Entity Linking
Yihao Ai, Zhiyuan Ning, Weiwei Dai +5
Biomedical entity linking aims to map nonstandard entities to standard entities in a knowledge base. Traditional supervised methods perform well but require extensive annotated dat…
Deep Cut-informed Graph Embedding and Clustering
Zhiyuan Ning, Zaitian Wang, Ran Zhang +8
Graph clustering aims to divide the graph into different clusters. The recently emerging deep graph clustering approaches are largely built on graph neural networks (GNN). However,…