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Supporting Medicinal Chemists in Iterative Hypothesis Generation for Drug Target Identification
Youngseung Jeon, Christopher Hwang, Ziwen Li +6
While drug discovery is vital for human health, the process remains inefficient. Medicinal chemists must navigate a vast protein space to identify target proteins that meet three c…
RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery
Youngseung Jeon, Ziwen Li, Thomas Li +3
Retrieving the biological impacts of protein-protein interactions (PPIs) is essential for target identification (Target ID) in drug development. Given the vast number of proteins i…
GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration
Ziwen Li, Xiang 'Anthony' Chen, Youngseung Jeon
Drug discovery (DD) has tremendously contributed to maintaining and improving public health. Hypothesizing that inhibiting protein misfolding can slow disease progression, research…