most citedGraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration

1 citations · 1 across the 8 of their papers we have counts for

collaborators

9 papers

cs.MA2026

When Extremists Enter LLM Societies: Investigating Extreme Behavior in Multi-Agent Systems

Guo Chen, Huaijin Xie, Ziwen Li +5

Large language model (LLM) agents increasingly serve as computational actors in multi-agent social simulations. While existing work emphasizes representative personas and average-c…

cs.AI2026

ForestBench: A Unified Graph Framework for Evaluating Multi-Agent Collaboration

Guo Chen, Ziwen Li, Reed Li +4

Multi-agent systems (MAS) built on Large Language Models (LLMs) are proliferating rapidly, but their heterogeneous execution traces provide no common basis for evaluation across me…

cs.IR2026

NGM-RAG: Neural Graph Matching based Retrieval-Augmented Generation

Guo Chen, Ziwen Li, Maolin Zheng +3

Retrieval-Augmented Generation (RAG) significantly enhances the ability of Large Language Models (LLMs) to provide accurate and contextually relevant answers by dynamically integra…

cs.CR2026

LLM Anonymization Against Agentic Re-Identification

Ziwen Li, Jianing Wen, Tianshi Li

Agentic LLMs with web search change the threat model for text anonymization: weak contextual cues can become cross-referenceable evidence for re-identification, yet those same deta…

cs.HC2026

Disclose with Care: Designing Privacy Controls in Interview Chatbots

Ziwen Li, Ziang Xiao, Tianshi Li

Collecting data on sensitive topics remains challenging in HCI, as participants often withhold information due to privacy concerns and social desirability bias. While chatbots' per…

cs.HC2025

Supporting Medicinal Chemists in Iterative Hypothesis Generation for Drug Target Identification

Youngseung Jeon, Christopher Hwang, Ziwen Li +6

While drug discovery is vital for human health, the process remains inefficient. Medicinal chemists must navigate a vast protein space to identify target proteins that meet three c…

cs.HC2025

CoSight: Exploring Viewer Contributions to Online Video Accessibility Through Descriptive Commenting

Ruolin wang, Xingyu Liu, Biao Wang +5

The rapid growth of online video content has outpaced efforts to make visual information accessible to blind and low vision (BLV) audiences. While professional Audio Description (A…

cs.CL2025

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery

Youngseung Jeon, Ziwen Li, Thomas Li +3

Retrieving the biological impacts of protein-protein interactions (PPIs) is essential for target identification (Target ID) in drug development. Given the vast number of proteins i…

q-bio.QM2025★ 1 cited

GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration

Ziwen Li, Xiang 'Anthony' Chen, Youngseung Jeon

Drug discovery (DD) has tremendously contributed to maintaining and improving public health. Hypothesizing that inhibiting protein misfolding can slow disease progression, research…