activity
20242026
most citedComputational Protein Science in the Era of Large Language Models (LLMs)

7 citations · 8 across the 13 of their papers we have counts for

collaborators

14 papers

cs.CV2026

MAGIC: Marginal-Guided Compression with Optimal Transport for Efficient Visual Document Retrieval

Xu Yuan, Hua Liu, Wenqi Fan +1

Recent visual document retrieval (VDR) systems such as ColPali use multi-vector page embeddings, in which patch-level vectors enable fine-grained evidence matching but incur substa…

cs.AI2026

A/B Agent: A Self-Evolving Agent for Strategy Iteration in Industrial A/B Testing

Zhuohang Jiang, Yuxin Chen, Yongsen Pan +6

Industrial recommendation strategy iteration heavily relies on large-scale A/B experimentation. Traditional tuning requires experts to repeatedly design strategies, configure exper…

cs.IR2026

HVM-GraphRAG: Holistic-View Multimodal Graph Retrieval-Augmented Generation on Complex Document

Xin He, Yili Wang, Wenqi Fan +4

Question answering (QA) over complex documents requires models to retrieve and integrate evidence distributed across distant document regions and modalities. Multimodal GraphRAG pr…

cs.IR2026

ReRec: Reasoning-Augmented LLM-based Recommendation Assistant via Reinforcement Fine-tuning

Jiani Huang, Shijie Wang, Liangbo Ning +2

With the rise of LLMs, there is an increasing need for intelligent recommendation assistants that can handle complex queries and provide personalized, reasoning-driven recommendati…

cs.IR2025

WebRec: Enhancing LLM-based Recommendations with Attention-guided RAG from Web

Zihuai Zhao, Yujuan Ding, Wenqi Fan +1

Recommender systems play a vital role in alleviating information overload and enriching users' online experience. In the era of large language models (LLMs), LLM-based recommender…

cs.IR2025

Continuous-time Discrete-space Diffusion Model for Recommendation

Chengyi Liu, Xiao Chen, Shijie Wang +2

In the era of information explosion, Recommender Systems (RS) are essential for alleviating information overload and providing personalized user experiences. Recent advances in dif…

cs.CV2025★ 1 cited

mKG-RAG: Leveraging Multimodal Knowledge Graphs in Retrieval-Augmented Generation for Knowledge-intensive VQA

Xu Yuan, Liangbo Ning, Qingqing Ye +2

Retrieval-Augmented Generation (RAG) has emerged as an effective paradigm for expanding the knowledge capacity of Multimodal Large Language Models (MLLMs) by incorporating external…

cs.AI2025

QA-Dragon: Query-Aware Dynamic RAG System for Knowledge-Intensive Visual Question Answering

Zhuohang Jiang, Pangjing Wu, Xu Yuan +2

Retrieval-Augmented Generation (RAG) has been introduced to mitigate hallucinations in Multimodal Large Language Models (MLLMs) by incorporating external knowledge into the generat…

cs.LG2025

GLProtein: Global-and-Local Structure Aware Protein Representation Learning

Yunqing Liu, Wenqi Fan, Xiaoyong Wei +1

Proteins are central to biological systems, participating as building blocks across all forms of life. Despite advancements in understanding protein functions through protein seque…

cs.IR2025

Investigating and Mitigating Stereotype-aware Unfairness in LLM-based Recommendations

Zihuai Zhao, Wenqi Fan, Yao Wu +1

Large Language Models (LLMs) have demonstrated unprecedented language understanding and reasoning capabilities to capture diverse user preferences and advance personalized recommen…

cs.CR2025

Exploring Backdoor Attack and Defense for LLM-empowered Recommendations

Liangbo Ning, Wenqi Fan, Qing Li

The fusion of Large Language Models (LLMs) with recommender systems (RecSys) has dramatically advanced personalized recommendations and drawn extensive attention. Despite the impre…

cs.IR2025

Retrieval-Augmented Purifier for Robust LLM-Empowered Recommendation

Liangbo Ning, Wenqi Fan, Qing Li

Recently, Large Language Model (LLM)-empowered recommender systems have revolutionized personalized recommendation frameworks and attracted extensive attention. Despite the remarka…

cs.CE2025★ 7 cited

Computational Protein Science in the Era of Large Language Models (LLMs)

Wenqi Fan, Yi Zhou, Shijie Wang +5

Considering the significance of proteins, computational protein science has always been a critical scientific field, dedicated to revealing knowledge and developing applications wi…

cs.SI2024

Score-based Generative Diffusion Models for Social Recommendations

Chengyi Liu, Jiahao Zhang, Shijie Wang +2

With the prevalence of social networks on online platforms, social recommendation has become a vital technique for enhancing personalized recommendations. The effectiveness of soci…