activity
20232026
most citedPepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding

3 citations · 6 across the 8 of their papers we have counts for

collaborators

10 papers

cs.AI2026

FLaG: Frequency-Domain Latent-attention Gated Pooling for Token Aggregation

Kewei Li, Rongying Zhang, Xueli Wang +6

Token aggregation converts token-level representations into fixed-dimensional sample representations, but most pooling methods operate only in the original token space. We introduc…

cs.LG2026

Frequency-Domain Latent Attention Gating for Cross-Domain Token Aggregation

Kewei Li, Rongying Zhang, Xueli Wang +5

Token aggregation is a common bottleneck in models that map token representations to sample-level predictions, yet most pooling methods operate only in the original token domain. W…

cs.LG2025

HeFS: Helper-Enhanced Feature Selection via Pareto-Optimized Genetic Search

Yusi Fan, Tian Wang, Zhiying Yan +8

Feature selection is a combinatorial optimization problem that is NP-hard. Conventional approaches often employ heuristic or greedy strategies, which are prone to premature converg…

cs.LG2025

A transformer-BiGRU-based framework with data augmentation and confident learning for network intrusion detection

Jiale Zhang, Pengfei He, Fei Li +5

In today's fast-paced digital communication, the surge in network traffic data and frequency demands robust and precise network intrusion solutions. Conventional machine learning m…

cs.LG2025

MolProphecy: Bridging Medicinal Chemists' Knowledge and Molecular Pre-Trained Models via a Multi-Modal Framework

Jianping Zhao, Qiong Zhou, Tian Wang +8

MolProphecy is a human-in-the-loop (HITL) multi-modal framework designed to integrate chemists' domain knowledge into molecular property prediction models. While molecular pre-trai…

cs.LG2025

DeepSelective: Interpretable Prognosis Prediction via Feature Selection and Compression in EHR Data

Ruochi Zhang, Qian Yang, Xiaoyang Wang +10

The rapid accumulation of Electronic Health Records (EHRs) has transformed healthcare by providing valuable data that enhance clinical predictions and diagnoses. While conventional…

cs.CL2025

Information Entropy Invariance: Enhancing Length Extrapolation in Attention Mechanisms

Kewei Li, Yanwen Kong, Yiping Xu +4

Since the emergence of research on improving the length extrapolation capabilities of large language models in 2021, some studies have made modifications to the scaling factor in t…

q-bio.BM2024★ 1 cited

AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides

Kewei Li, Yuqian Wu, Yinheng Li +7

Since the mechanism of action of drug molecules in the human body is difficult to reproduce in the in vitro environment, it becomes difficult to reveal the causes of the activity c…

cs.LG2024★ 3 cited

PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding

Ruochi Zhang, Haoran Wu, Chang Liu +8

Recent advances in protein language models have catalyzed significant progress in peptide sequence representation. Despite extensive exploration in this field, pre-trained models t…

q-bio.BM2023★ 2 cited

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids

Ruochi Zhang, Haoran Wu, Yuting Xiu +6

In recent years, the scientific community has become increasingly interested on peptides with non-canonical amino acids due to their superior stability and resistance to proteolyti…