activity
20242026
most citedSurvey and Improvement Strategies for Gene Prioritization with Large Language Models

1 citations · 1 across the 4 of their papers we have counts for

collaborators

5 papers

q-bio.QM2026

Documenting Trofinetide Treatment Phenotypes in Rett Syndrome with a Dual-LLM Consensus Pipeline

Daniel Palacios, Guantong Qi, Mikael Guzman Karlsson +6

Objective: Trofinetide, approved in 2023 as the first Rett syndrome treatment, lacks scalable real-world monitoring because chart review is labor-intensive. We developed a dual lar…

cs.CL2026

Institution-Specific LLM Prompting Recovers PHI That De-identification Systems and Their Gold Standards Both Miss

Daniel Palacios, Matthew Brady Neeley, Angel Adetomike Otto +6

Secondary use of electronic health records requires de-identification, yet existing systems miss \emph{institutionally situated} protected health information (PHI) such as hospital…

q-bio.GN2025

LA-MARRVEL: A Knowledge-Grounded, Language-Aware LLM Framework for Clinically Robust Rare Disease Gene Prioritization

Jaeyeon Lee, Lin Yao, Hyun-Hwan Jeong +1

Rare disease diagnosis requires matching variant-bearing genes to complex patient phenotypes across large and heterogeneous evidence sources. This process remains time-intensive in…

q-bio.GN2025★ 1 cited

Survey and Improvement Strategies for Gene Prioritization with Large Language Models

Matthew Neeley, Guantong Qi, Guanchu Wang +9

Rare diseases are challenging to diagnose due to limited patient data and genetic diversity. Despite advances in variant prioritization, many cases remain undiagnosed. While large…

cs.CE2024

Assessing and Enhancing Large Language Models in Rare Disease Question-answering

Guanchu Wang, Junhao Ran, Ruixiang Tang +6

Despite the impressive capabilities of Large Language Models (LLMs) in general medical domains, questions remain about their performance in diagnosing rare diseases. To answer this…