activity
20142026
most citedWeighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses

122 citations · 127 across the 6 of their papers we have counts for

collaborators

9 papers

cs.SI2026

Improved Methods for k-core Community Search

Ian Chen, Haotian Yi, Arun Sharma +2

Community search based on user-specified query nodes is complementary to community finding or graph clustering. Prior work in community search is divided into optimizing for extern…

cs.SI2025

On the Optimization of Methods for Establishing Well-Connected Communities

Mohammad Dindoost, Oliver Alvarado Rodriguez, Bartosz Bryg +4

Community detection plays a central role in uncovering meso scale structures in networks. However, existing methods often suffer from disconnected or weakly connected clusters, und…

cs.SI2025

Dense Subgraph Clustering and a New Cluster Ensemble Method

The-Anh Vu-Le, João Alfredo Cardoso Lamy, Tomás Alessi +5

We propose DSC-Flow-Iter, a new community detection algorithm that is based on iterative extraction of dense subgraphs. Although DSC-Flow-Iter leaves many nodes unclustered, it is…

cs.SI2025

Using Stochastic Block Models for Community Detection: The issue of edge-connectivity

The-Anh Vu-Le, Minhyuk Park, Ian Chen +2

A relevant, sometimes overlooked, quality criterion for communities in graphs is that they should be well-connected in addition to being edge-dense. Prior work has shown that leadi…

cs.SI2025★ 2 cited

An Agent-based Model of Citation Behavior

George Chacko, Minhyuk Park, Vikram Ramavarapu +3

Whether citations can be objectively and reliably used to measure productivity and scientific quality of articles and researchers can, and should, be vigorously questioned. However…

cs.SI2025★ 3 cited

EC-SBM Synthetic Network Generator

The-Anh Vu-Le, Lahari Anne, George Chacko +1

Generating high-quality synthetic networks with realistic community structure is vital to effectively evaluate community detection algorithms. In this study, we propose a new synth…

cs.SI2025

RECCS: Realistic Cluster Connectivity Simulator for Synthetic Network Generation

Lahari Anne, The-Anh Vu-Le, Minhyuk Park +2

The limited availability of useful ground-truth communities in real-world networks presents a challenge to evaluating and selecting a "best" community detection method for a given…

cs.SI2024

FastEnsemble: scalable ensemble clustering on large networks

Yasamin Tabatabaee, Eleanor Wedell, Minhyuk Park +1

Many community detection algorithms are inherently stochastic, leading to variations in their output depending on input parameters and random seeds. This variability makes the resu…

q-bio.QM2014★ 122 cited

Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses

Md. Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau +1

Because biological processes can make different loci have different evolutionary histories, species tree estimation requires multiple loci from across the genome. While many proces…